ShiBASE - Metabolic pathway

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	S. dysenteriae Sd197
	S. flexneri Sf301
	S. boydii Sb227
	S. sonnei Ss046

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Metabolic pathways in Shigella

Index

    1. Metabolism
      Carbohydrate   Energy   Lipid   Nucleotide   Amino acid   Other amino acid
      Glycan   PK/NRP   Cofactor/vitamin   Secondary metabolite   Xenobiotics
    2. Genetic Information Processing
    3. Cellular Processes

Metabolism
	1. Carbohydrate Metabolism
		Glycolysis / Gluconeogenesis
		Citrate cycle (TCA cycle)
		Pentose phosphate pathway
		Pentose and glucuronate interconversions
		Fructose and mannose metabolism
		Galactose metabolism
		Ascorbate and aldarate metabolism
		Starch and sucrose metabolism
		Aminosugars metabolism
		Nucleotide sugars metabolism
		Pyruvate metabolism
		Glyoxylate and dicarboxylate metabolism
		Propanoate metabolism
		Butanoate metabolism
		C5-Branched dibasic acid metabolism
		Inositol phosphate metabolism
	2. Energy Metabolism
		Oxidative phosphorylation
		ATP synthesis
		Carbon fixation
		Reductive carboxylate cycle (CO2 fixation)
		Methane metabolism
		Nitrogen metabolism
		Sulfur metabolism
	3. Lipid Metabolism
		Fatty acid biosynthesis (path 1)
		Fatty acid biosynthesis (path 2)
		Fatty acid metabolism
		Biosynthesis of steroids
		Bile acid biosynthesis
		Androgen and estrogen metabolism
		Glycerolipid metabolism
		Glycerophospholipid metabolism
		Prostaglandin and leukotriene metabolism
	4. Nucleotide Metabolism
		Purine metabolism
		Pyrimidine metabolism
	5. Amino Acid Metabolism
		Glutamate metabolism
		Alanine and aspartate metabolism
		Glycine, serine and threonine metabolism
		Methionine metabolism
		Cysteine metabolism
		Valine, leucine and isoleucine degradation
		Valine, leucine and isoleucine biosynthesis
		Lysine biosynthesis
		Lysine degradation
		Arginine and proline metabolism
		Histidine metabolism
		Tyrosine metabolism
		Phenylalanine metabolism
		Tryptophan metabolism
		Phenylalanine, tyrosine and tryptophan biosynthesis
		Urea cycle and metabolism of amino groups
	6. Metabolism of Other Amino Acids
		beta-Alanine metabolism
		Taurine and hypotaurine metabolism
		Aminophosphonate metabolism
		Selenoamino acid metabolism
		Cyanoamino acid metabolism
		D-Glutamine and D-glutamate metabolism
		D-Alanine metabolism
		Glutathione metabolism
	7. Glycan Biosynthesis and Metabolism
		N-Glycan biosynthesis
		N-Glycan degradation
		O-Glycan biosynthesis
		Glycosaminoglycan degradation
		Lipopolysaccharide biosynthesis
		Peptidoglycan biosynthesis
		Glycosphingolipid metabolism
		Blood group glycolipid biosynthesis-neolactoseries
		Globoside metabolism
		Ganglioside biosynthesis
	8. Biosynthesis of Polyketides and Nonribosomal Peptides
		Biosynthesis of ansamycins
		Polyketide sugar unit biosynthesis
		Biosynthesis of siderophore group nonribosomal peptides
	9. Metabolism of Cofactors and Vitamins
		Thiamine metabolism
		Riboflavin metabolism
		Vitamin B6 metabolism
		Nicotinate and nicotinamide metabolism
		Pantothenate and CoA biosynthesis
		Biotin metabolism
		Folate biosynthesis
		One carbon pool by folate
		Porphyrin and chlorophyll metabolism
		Ubiquinone biosynthesis
	10. Biosynthesis of Secondary Metabolites
		Terpenoid biosynthesis
		Limonene and pinene degradation
		Alkaloid biosynthesis I
		Alkaloid biosynthesis II
		Streptomycin biosynthesis
		Novobiocin biosynthesis
	11. Biodegradation of Xenobiotics
		Caprolactam degradation
		Biphenyl degradation
		Toluene and xylene degradation
		gamma-Hexachlorocyclohexane degradation
		Tetrachloroethene degradation
		Styrene degradation
		1,4-Dichlorobenzene degradation
		Nitrobenzene degradation
		Ethylbenzene degradation
		Fluorene degradation
		Carbazole degradation
		Benzoate degradation via CoA ligation
		Benzoate degradation via hydroxylation
		Bisphenol A degradation
		1- and 2-Methylnaphthalene degradation
Genetic Information Processing
	1. Transcription
		RNA polymerase
	2. Translation
		Ribosome
		Aminoacyl-tRNA biosynthesis
	3. Folding, Sorting and Degradation
		Protein export
		Type II secretion system
		Type III secretion system
	4. Replication and Repair
		DNA polymerase
Cellular Processes
	1. Cell Motility
		Bacterial chemotaxis
		Flagellar assembly
Note: all metabolic pathway information and map figures are available from KEGG.