Release 1: core dataset (summary, details)

Release 2: intra-genera comparative pathogenomics dataset

Release 3: Inter-genera comparative analysis dataset

R1: summary statistics
	Type of data Number Pathogens (by genus) 24 Completed sequences 334   Chromosomes 270   Plasmids 64 Virulence factors 418 Pathogenicity islands 24 VF related genes 2353 Related Literatures 1879

R1: detail statistics
	Pathogen # of VFs # of PAIs Related genes Bacillus 4   8 Bartonella 5   43 Bordetella 12   74 Brucella 6   23 Campylobacter 11   105 Clostridium 20   27 Corynebacterium 2   10 Enterococcus 13   34 Escherichia 78 7 567   DAEC 1   5   EAEC 6   24   EHEC 24 1 75   EPEC 22 2 74   ETEC 3   14   NMEC 7       UPEC 15 4 364 Haemophilus 15   60 Helicobacter 12 1 59 Legionella 28   117 Listeria 23 2 24 Mycobacterium 35   88 Neisseria 12   50 Pseudomonas 21   192 Salmonella 22 5 179 Shigella 12 4 197 Staphylococcus 25   76 Streptococcus 34   88   S.agalactiae 10   27   S.pneumoniae 10   26   S.pyogenes 14   25 Vibrio 11 2 99 Yersinia 14 3 194 Chlamydia 1   31 Mycoplasma 2   8 Total 418 24 2353

R2: Intra-genera comparative pathogenomics statistics
	Pathogen # of speciesa # of genomesa # of VFsb # of genes Bacillus 7 13 17 32 Bartonella 4 4 10 104 Bordetella 4 4 17 155 Brucella 5 9 5 51 Campylobacter 2 6 13 85 Clostridium 9 17 21 35 Corynebacterium 5 7 12 36 Enterococcus 1 1 11 34 Escherichia 1 7 41 147 Haemophilus 3 7 22 130 Helicobacter 3 8 19 95 Legionella 1 4 22 131 Listeria 3 6 30 34 Mycobacterium 13 24 65 232 Neisseria 2 6 20 66 Pseudomonas 7 17 39 424 Salmonella 2 16 38 219 Shigella 4 8 23 112 Staphylococcus 4 18 56 120 Streptococcus 8 28 75 131 Vibrio 4 6 30 242 Yersinia 3 14 20 208 Chlamydia 6 12 1 23 Mycoplasma 11 13 25 31 Total 112 255 632 2877

^a Both pathogenic and non-pathogenic isolates are included.
^b Those genome-predicted VFs are also listed for comparison.

R3: Inter-genera comparative analysis statistics (>>>)
	VF super-family # of sub-classes # of VFs # of genera involved # of genes # of related references Adhesion & invasion 10 425 47 2002 385 Secretion systems 6 217 48 2872 484 Toxin 12 431 37 521 199 Iron acquisition 3 72 30 551 69 Total 31 1145 75 5928 1122

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