VFDB - comparative pathogenomic composition of Pseudomonas

Comparison of pathogenomic composition of Pseudomonas. Total 17 genomes available.

Virulence factors	# of related genes	P. aeruginosa PAO1	P. aeruginosa PA7	P. aeruginosa UCBPP-PA14	P. aeruginosa LESB58	P. entomophila L48	P. fluorescens Pf-5	P. fluorescens PfO-1	P. fluorescens SBW25	P. mendocina ymp	P. putida KT2440	P. putida F1	P. putida GB-1	P. putida W619	P. stutzeri A1501	P. syringae DC3000 (pv. tomato)	P. syringae B728a (pv. syringae)	P. syringae 1448A (pv. phaseolicola)
Adherence
Flagella	46	+	±	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
LPS O-antigen (P. aeruginosa)	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-
Type IV pili biosynthesis	24	+	+	±	+	±	±	±	±	±	±	±	±	±	+	±	±	±
Type IV pili twitching motility related proteins	10	+	+	+	+	±	±	±	±	±	±	±	±	±	±	±	±	±
Antimicrobial activity
Phenazines biosynthesis	17	+	±	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-
Antiphagocytosis
Alginate biosynthesis	13	+	+	+	+	+	+	+	+	+	+	+	+	+	±	+	+	+
Alginate regulation	12	+	+	+	+	±	±	±	±	±	±	±	±	±	±	±	±	±
Biosurfactant
Rhamnolipid biosynthesis	3	+	±	+	+	-	-	-	±	-	-	-	-	-	-	-	-	-
Iron uptake
Achromobactin biosynthesis and transport	8	-	±	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+
Pyochelin	10	+	+	+	+	±	±	-	-	-	-	-	-	-	-	±	-	±
Pyochelin receptor	1	+	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-
Pyoverdine	16	+	±	+	+	±	±	±	±	±	±	±	±	±	-	±	±	±
Pyoverdine receptors	1	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+	+	+
Yersiniabactin	9	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+
Lipase
Hemolytic phospholipase C	1	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-
Non-hemolytic phospholipase C	1	+	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-
Phospholipase C	1	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-
Phospholipase D	1	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Protease
Alkaline protease	1	+	+	+	+	+	+	+	+	-	-	-	-	-	-	+	+	-
Elastase	2	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-
Protease IV	1	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-
Quorum sensing systems
Acylhomoserine lactone synthase	1	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
N-(3-oxo-dodecanoyl)-L-homoserine lactone QS system	2	+	+	+	+	-	-	-	±	-	-	-	-	-	-	-	-	-
N-(3-oxo-hexanoyl)-Lhomoserine lactone QS system	2	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+
N-(butanoyl)-L-homoserine lactone QS system	2	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-
Regulation
GacS/GacA two-component system	2	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Secretion system
Harpins, pilus-associated proteins and other candidate TTSS helpers	6	-	-	-	-	-	-	-	-	-	-	-	-	-	-	±	±	±
Hcp secretion island-1 encoded type VI secretion system (H-T6SS)	21	+	+	+	+	-	±	-	±	±	±	±	±	±	-	±	±	±
P. aeruginosa TTSS	36	+	-	+	±	-	-	-	-	-	-	-	-	-	-	-	-	-
P. aeruginosa TTSS translocated effectors	4	±	-	±	±	-	-	-	-	-	-	-	-	-	-	-	-	-
P. syringae TTSS	32	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	±	±
P. syringae TTSS effectors	81	-	-	-	-	-	-	-	-	-	-	-	-	-	-	±	±	±
Toxin
Exototoxin-A (ETA)	1	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-
Hydrogen cyanide production	3	+	+	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-
Phytotoxin coronatine	20	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-
Phytotoxin phaseolotoxin	21	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+
Phytotoxin syringomycin	7	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-
Phytotoxin syringopeptin	3	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-
TccC-type insecticidal toxins	1	-	-	-	-	+	-	+	-	-	-	-	-	-	-	+	+	+

Last update: Fri Aug 7 23:14:10 2009