Institute of Pathogen Biology

Qi JIN M.D., Professor

Tel: 86-10-62477732
Email: jinqi@ipbcams.ac.cn

Research interests:

High-throughput molecular biology of microbial pathogens by use of omics technologies.

Selected publications:

Gao L, Lu W, Bai L, Wang X, Xu J, Catanzaro A, Cardenas V, Li X, Yang Y, Du J, Sui H, Xia Y, Li M, Feng B, Li Z, Xin H, Zhao R, Liu J, Pan S, Shen F, He J, Yang S, Si H, Wang Y, Xu Z, Tan Y, Chen T, Xu W, Peng H, Wang Z, Zhu T, Zhou F, Liu H, Zhao Y, Cheng S, Jin Q: Latent tuberculosis infection in rural China: baseline results of a population-based, multicentre, prospective cohort study. Lancet Infect Dis 2015, 15(3):310-319.
Chen Z, Wang J, Bao L, Guo L, Zhang W, Xue Y, Zhou H, Xiao Y, Wu F, Deng Y, Qin C, Jin Q: Human monoclonal antibodies targeting the haemagglutinin glycoprotein can neutralize H7N9 influenza virus. Nat Commun 2015, 6:6714.
Hu S, Li J, Xu F, Mei S, Le Duff Y, Yin L, Pang X, Cen S, Jin Q, Liang C, Guo F: SAMHD1 Inhibits LINE-1 Retrotransposition by Promoting Stress Granule Formation. PLoS Genet 2015, 11(7):e1005367.
Zheng J, Liu L, Liu B, Jin Q: Phosphoproteomic analysis of bacillus Calmette-Guerin using gel-based and gel-free approaches. J Proteomics 2015, 126:189-199.
Wang J, Chen Z, Bao L, Zhang W, Xue Y, Pang X, Zhang X, Qin C, Jin Q: Characterization of Two Human Monoclonal Antibodies Neutralizing Influenza A H7N9 Viruses. J Virol 2015, 89(17):9115-9118.
Hu Y, Ren X, Liu Y, Yang F, Liu H, Cao B, Jin Q: Serial high-resolution analysis of blood virome and host cytokines expression profile of a patient with fatal H7N9 infection by massively parallel RNA sequencing. Clin Microbiol Infect 2015, 21(7):713 e711-714.
Xu X, Liu T, Ren X, Liu B, Yang J, Chen L, Wei C, Zheng J, Dong J, Sun L, Zhu Y, Jin Q: Proteogenomic Analysis of Trichophyton rubrum Aided by RNA Sequencing. J Proteome Res 2015, 14(5):2207-2218.
Ren X, Hu Y, Yang F, Xiao Y, Li L, Dong J, Sun L, Zhu Y, Jin Q: Clinical utility comparison of two benchtop deep sequencing instruments for rapid diagnosis of newly emergent influenza infections. Clin Microbiol Infect 2015, 21(3):290 e291-294.
Zhang X, Liu L, Zhang Y, Dai G, Huang H, Jin Q: Genetic determinants involved in p-aminosalicylic acid resistance in clinical isolates from tuberculosis patients in northern China from 2006 to 2012. Antimicrob Agents Chemother 2015, 59(2):1320-1324.
Peng J, Wang T, Zhu H, Guo J, Li K, Yao Q, Lv Y, Zhang J, He C, Chen J, Wang L, Jin Q: Multiplex PCR/mass spectrometry screening of biological carcinogenic agents in human mammary tumors. J Clin Virol 2014, 61(2):255-259.
Chen Y, Liu L, Fu H, Wei C, Jin Q: Comparative proteomic analysis of outer membrane vesicles from Shigella flexneri under different culture conditions. Biochem Biophys Res Commun 2014, 453(4):696-702.
Cao M, Wei C, Zhao L, Wang J, Jia Q, Wang X, Jin Q, Deng T: DnaJA1/Hsp40 is co-opted by influenza A virus to enhance its viral RNA polymerase activity. J Virol 2014, 88(24):14078-14089.
Si Y, Li J, Niu Y, Liu X, Ren L, Guo L, Cheng M, Zhou H, Wang J, Jin Q, Yang W: Entry properties and entry inhibitors of a human H7N9 influenza virus. PLoS One 2014, 9(9):e107235.
Yang F, Yuan J, Wang X, Li J, Du J, Su H, Zhou B, Jin Q: Severe hand, foot, and mouth disease and coxsackievirus A6-Shenzhen, China. Clin Infect Dis 2014, 59(10):1504-1505.
Yang J, Zhang T, Guo L, Hu Y, Li J, Su H, Xiao Y, Ren X, Dong J, Sun L, Li L, Yang F, Wang J, Yuan H, Jin Q: Mutations of Novel Influenza A(H10N8) Virus in Chicken Eggs and MDCK Cells. Emerg Infect Dis 2014, 20(8):1541-1543.
Yang L, Wu Z, Ren X, Yang F, Zhang J, He G, Dong J, Sun L, Zhu Y, Zhang S, Jin Q: MERS-related betacoronavirus in Vespertilio superans bats, China. Emerg Infect Dis 2014, 20(7):1260-1262.
Wang J, Du J, Jin Q: Class I ADP-ribosylation factors are involved in enterovirus 71 replication. PLoS One 2014, 9(6):e99768.
Wu Z, Yang L, Yang F, Ren X, Jiang J, Dong J, Sun L, Zhu Y, Zhou H, Jin Q: Novel Henipa-like virus, Mojiang Paramyxovirus, in rats, China, 2012. Emerg Infect Dis 2014, 20(6):1064-1066.
Jiang F, Waterfield NR, Yang J, Yang G, Jin Q: A Pseudomonas aeruginosa type VI secretion phospholipase D effector targets both prokaryotic and eukaryotic cells. Cell Host Microbe 2014, 15(5):600-610.
Li JL, Yuan J, Yang F, Wu ZQ, Hu YF, Xue Y, Zhou BP, Jin Q: Epidemic characteristics of hand, foot, and mouth disease in southern China, 2013: Coxsackievirus A6 has emerged as the predominant causative agent. J Infect 2014, 69(3):299-303.
Liu T, Xu X, Leng W, Xue Y, Dong J, Jin Q: Analysis of gene expression changes in Trichophyton rubrum after skin interaction. J Med Microbiol 2014, 63(Pt 5):642-648.
Wang J, Su H, Zhang T, Du J, Cui S, Yang F, Jin Q: Inhibition of Enterovirus 71 Replication by 7-Hydroxyflavone and Diisopropyl-Flavon7-yl Phosphate. PLoS One 2014, 9(3):e92565.
Chen L, Liu B, Yang J, Jin Q: DBatVir: the database of bat-associated viruses. Database (Oxford) 2014, 2014:bau021.
Wang J, Zhang T, Du J, Cui S, Yang F, Jin Q: Anti-enterovirus 71 effects of chrysin and its phosphate ester. PLoS One 2014, 9(3):e89668.
Zhou Z, Cao M, Guo Y, Zhao L, Wang J, Jia X, Li J, Wang C, Gabriel G, Xue Q, Yi Y, Cui S, Jin Q, Wang J, Deng T: Fragile X mental retardation protein stimulates ribonucleoprotein assembly of influenza A virus. Nat Commun 2014, 5:3259.
Liu L, Zhang WJ, Zheng J, Fu H, Chen Q, Zhang Z, Chen X, Zhou B, Feng L, Liu H, Jin Q: Exploration of Novel Cellular and Serological Antigen Biomarkers in the ORFeome of Mycobacterium tuberculosis. Mol Cell Proteomics 2014, 13(3):897-906.
Zhou Z, Jia X, Xue Q, Ma Y, Zhao Z, Jiang Z, He B, Jin Q, Wang J: TRIM14 is a mitochondrial adaptor that facilitates retinoic acid-inducible gene-I-like receptor-mediated innate immune response. Proc Natl Acad Sci U S A 2014, 111(2):E245-254.
Li X, Gao C, Yang Y, Zhou F, Li M, Jin Q, Gao L: Systematic review with meta-analysis: the association between human papillomavirus infection and oesophageal cancer. Aliment Pharmacol Ther 2014, 39(3):270-281.
Du J, Wang X, Hu Y, Li Z, Li Y, Sun S, Yang F, Jin Q: Changing aetiology of hand, foot and mouth disease in Linyi, China, 2009-2011. Clin Microbiol Infect 2014, 20(1):O47-49.
Gao X, Zou T, Mu Z, Qin B, Yang J, Waltersperger S, Wang M, Cui S, Jin Q: Structural insights into VirB-DNA complexes reveal mechanism of transcriptional activation of virulence genes. Nucleic Acids Res 2013, 41(22):10529-10541.
Liu T, Ren X, Xiao T, Yang J, Xu X, Dong J, Sun L, Chen R, Jin Q: Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum. BMC Genomics 2013, 14:931.
Ren X, Yang F, Hu Y, Zhang T, Liu L, Dong J, Sun L, Zhu Y, Xiao Y, Li L, Yang J, Wang J, Jin Q: Full genome of influenza A (H7N9) virus derived by direct sequencing without culture. Emerg Infect Dis 2013, 19(11):1881-1884.
Zheng J, Liu L, Wang J, Jin Q: Urinary proteomic and non-prefractionation quantitative phosphoproteomic analysis during pregnancy and non-pregnancy. BMC Genomics 2013, 14(1):777.
Wu Z, Du J, Zhang T, Xue Y, Yang F, Jin Q: Recombinant human coxsackievirus b3 from children with acute myocarditis in china. J Clin Microbiol 2013, 51(9):3083-3086.
Zheng J, Ren X, Wei C, Yang J, Hu Y, Liu L, Xu X, Wang J, Jin Q: Analysis of the Secretome and Identification of Novel Constituents from Culture Filtrate of Bacillus Calmette-Guerin Using High-resolution Mass Spectrometry. Mol Cell Proteomics 2013, 12(8):2081-2095.
Zhang T, Du J, Xue Y, Su H, Yang F, Jin Q: Epidemics and Frequent Recombination within Species in Outbreaks of Human Enterovirus B-Associated Hand, Foot and Mouth Disease in Shandong China in 2010 and 2011. PLoS One 2013, 8(6):e67157.
Ren X, Wang Y, Zhang XS, Jin Q: iPcc: a novel feature extraction method for accurate disease class discovery and prediction. Nucleic Acids Res 2013, 41(14):e143.
Li K, Guo J, Zhao R, Xue Y, Chen L, Yang J, Peng J, Jin Q: Prevalence of 10 human polyomaviruses in fecal samples from children with acute gastroenteritis: a case-control study. J Clin Microbiol 2013, 51(9):3107-3109.
Cheng M, Si Y, Niu Y, Liu X, Li X, Zhao J, Jin Q, Yang W: High-Throughput Profiling of Alpha Interferon- and Interleukin-28B-Regulated MicroRNAs and Identification of let-7s with Anti-Hepatitis C Virus Activity by Targeting IGF2BP1. J Virol 2013, 87(17):9707-9718.
Zhang Y, Liu H, Wang L, Yang F, Hu Y, Ren X, Li G, Yang Y, Sun S, Li Y, Chen X, Li X, Jin Q: Comparative study of the cytokine/chemokine response in children with differing disease severity in enterovirus 71-induced hand, foot, and mouth disease. PLoS One 2013, 8(6):e67430.
Pang X, Hu S, Li J, Xu F, Mei S, Zhou J, Cen S, Jin Q, Guo F: Identification of novel key amino acids at the interface of the transmembrane domains of human BST-2 and HIV-1 Vpu. Retrovirology 2013, 10(1):84.
Yang L, Wu Z, Ren X, Yang F, He G, Zhang J, Dong J, Sun L, Zhu Y, Du J, Zhang S, Jin Q: Novel SARS-like Betacoronaviruses in Bats, China, 2011. Emerg Infect Dis 2013, 19(6):989-991.
Zhou F, Li M, Li X, Yang Y, Gao C, Jin Q, Gao L: Seroprevalence of Entamoeba histolytica Infection among Chinese Men Who Have Sex with Men. PLoS Negl Trop Dis 2013, 7(5):e2232.
Zhang X, Zhao B, Huang H, Zhu Y, Peng J, Dai G, Jiang G, Liu L, Zhao Y, Jin Q: Co-occurrence of amikacin-resistant and -susceptible Mycobacterium tuberculosis isolates in clinical samples from Beijing, China. J Antimicrob Chemother 2013, 68(7):1537-1542.
Zheng J, Liu C, Liu L, Jin Q: Characterisation of a thermo-alkali-stable lipase from oil-contaminated soil using a metagenomic approach. Syst Appl Microbiol 2013, 36(3):197-204.
Wang B, Xi X, Lei X, Zhang X, Cui S, Wang J, Jin Q, Zhao Z: Enterovirus 71 Protease 2A(pro) Targets MAVS to Inhibit Anti-Viral Type I Interferon Responses. PLoS Pathog 2013, 9(3):e1003231.
Zhang X, Yu J, Li M, Sun X, Han Q, Zhou F, Li X, Yang Y, Xiao D, Ruan Y, Jin Q, Gao L: Prevalence and Related Risk Behaviors of HIV, Syphilis, and Anal HPV Infection Among Men who have Sex with Men from Beijing, China. AIDS Behav 2013, 17(3):1129-1136.
Ren X, Wang Y, Chen L, Zhang XS, Jin Q: ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions. Nucleic Acids Res 2013, 41(4):e53.
Peng J, Gao L, Guo J, Wang T, Wang L, Yao Q, Zhu H, Jin Q: Type-Specific Detection of 30 Oncogenic Human Papillomaviruses by Genotyping both E6 and L1 Genes. J Clin Microbiol 2013, 51(2):402-408.
Peng J, Yang F, Xiong Z, Guo J, Du J, Hu Y, Jin Q: Sensitive and rapid detection of viruses associated with hand foot and mouth disease using multiplexed MALDI-TOF analysis. J Clin Virol 2013, 56(2):170-174.
Wang J, Du J, Wu Z, Jin Q: Quinacrine impairs enterovirus 71 RNA replication by preventing binding of polypyrimidine-tract binding protein with internal ribosome entry sites. PLoS One 2013, 8(1):e52954.
Li X, Gao L, Li H, Gao J, Yang Y, Zhou F, Gao C, Li M, Jin Q: Human papillomavirus infection and laryngeal cancer risk: a systematic review and meta-analysis. J Infect Dis 2013, 207(3):479-488.
Chang Z, Lu S, Chen L, Jin Q, Yang J: Causative species and serotypes of shigellosis in mainland china: systematic review and meta-analysis. PLoS One 2012, 7(12):e52515.
Ren X, Liu T, Dong J, Sun L, Yang J, Zhu Y, Jin Q: Evaluating de bruijn graph assemblers on 454 transcriptomic data. PLoS One 2012, 7(12):e51188.
Zheng J, Liu L, Wei C, Leng W, Yang J, Li W, Wang J, Jin Q: A comprehensive proteomic analysis of Mycobacterium bovis bacillus Calmette-Guerin using high resolution Fourier transform mass spectrometry. J Proteomics 2012, 77:357-371.
Wu Z, Ren X, Yang L, Hu Y, Yang J, He G, Zhang J, Dong J, Sun L, Du J, Liu L, Xue Y, Wang J, Yang F, Zhang S, Jin Q: Virome analysis for identification of novel Mammalian viruses in bat species from chinese provinces. J Virol 2012, 86(20):10999-11012.
Liu K, Zhang Y, Hu S, Yu Y, Yang Q, Jin D, Chen X, Jin Q, Liu H: Increased levels of BAFF and APRIL related to human active pulmonary tuberculosis. PLoS One 2012, 7(6):e38429.
Wang J, Wu Z, Jin Q: COPI is required for enterovirus 71 replication. PLoS One 2012, 7(5):e38035.
Zhang T, Du J, Liu L, Chen X, Yang F, Jin Q: Inhibitory effects and underlying mechanism of 7-hydroxyflavone phosphate ester in HeLa cells. PLoS One 2012, 7(5):e36652.
Yang Y, Li X, Zhang Z, Qian HZ, Ruan Y, Zhou F, Gao C, Li M, Jin Q, Gao L: Association of human papillomavirus infection and abnormal anal cytology among HIV-infected MSM in Beijing, China. PLoS One 2012, 7(4):e35983.
Hu YF, Yang F, Du J, Zhang T, Xue Y, Jin Q: Coxsackievirus B5, associated with neurological hand, foot and mouth disease, China. J Infect 2012, 65(2):189-191.
Fu H, Liu L, Zhang X, Zhu Y, Zhao L, Peng J, He H, Jin Q: Common changes in global gene expression induced by RNA polymerase inhibitors in Shigella flexneri. PLoS One 2012, 7(3):e33240.
Zou T, Yao X, Qin B, Zhang M, Cai L, Shang W, Svergun DI, Wang M, Cui S, Jin Q: Crystal structure of Pseudomonas aeruginosa Tsi2 reveals a stably folded superhelical antitoxin. J Mol Biol 2012, 417(4):351-361.
Zhang T, Wu Z, Du J, Hu Y, Liu L, Yang F, Jin Q: Anti-Japanese-encephalitis-viral effects of kaempferol and daidzin and their RNA-binding characteristics. PLoS One 2012, 7(1):e30259.
Zhang X, Zhao B, Liu L, Zhu Y, Zhao Y, Jin Q: Subpopulation analysis of heteroresistance to fluoroquinolone in Mycobacterium tuberculosis isolates from Beijing, China. J Clin Microbiol 2012, 50(4):1471-1474.
Li J, Wang Z, Gonzalez R, Xiao Y, Zhou H, Zhang J, Paranhos-Baccala G, Vernet G, Jin Q, Wang J, Hung T: Prevalence of human metapneumovirus in adults with acute respiratory tract infection in Beijing, China. J Infect 2012, 64(1):96-103.
Chen L, Xiong Z, Sun L, Yang J, Jin Q: VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res 2012, 40(Database issue):D641-645.
Zhao L, Liu L, Leng W, Wei C, Jin Q: A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF. BMC Genomics 2011, 12:528.
Wu Z, Xue Y, Wang B, Du J, Jin Q: Broad-spectrum antiviral activity of RNA interference against four genotypes of Japanese encephalitis virus based on single microRNA polycistrons. PLoS One 2011, 6(10):e26304.
Yang J, Yang F, Ren L, Xiong Z, Wu Z, Dong J, Sun L, Zhang T, Hu Y, Du J, Wang J, Jin Q: Unbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach. J Clin Microbiol 2011, 49(10):3463-3469.
Wang J, Fan T, Yao X, Wu Z, Guo L, Lei X, Wang M, Jin Q, Cui S: Crystal structures of enterovirus 71 3C protease complexed with rupintrivir reveal the roles of catalytically important residues. J Virol 2011, 85(19):10021-10030.
Yang F, Du J, Hu Y, Wang X, Xue Y, Dong J, Sun L, Li Z, Li Y, Sun S, Jin Q: Enterovirus coinfection during an outbreak of hand, foot, and mouth disease in Shandong, China. Clin Infect Dis 2011, 53(4):400-401.
Xie S, Wang K, Yu W, Lu W, Xu K, Wang J, Ye B, Schwarz W, Jin Q, Sun B: DIDS blocks a chloride-dependent current that is mediated by the 2B protein of enterovirus 71. Cell Res 2011, 21(8):1271-1275.
Lei X, Sun Z, Liu X, Jin Q, He B, Wang J: Cleavage of the adaptor protein TRIF by enterovirus 71 3C inhibits antiviral responses mediated by Toll-like receptor 3. J Virol 2011, 85(17):8811-8818.
Yang Y, Li X, Zhou F, Jin Q, Gao L: Prevalence of drug-resistant tuberculosis in mainland China: systematic review and meta-analysis. PLoS One 2011, 6(6):e20343.
Yu L, Ling G, Deng X, Jin J, Jin Q, Guo N: In vitro interaction between fluconazole and triclosan against clinical isolates of fluconazole-resistant Candida albicans determined by different methods. Antimicrob Agents Chemother 2011, 55(7):3609-3612.
Luo W, Zhang XB, Huang YT, Hao PP, Jiang ZM, Wen Q, Zhou MQ, Jin Q, Ma L: Development of genetically engineered CD4+ and CD8+ T cells expressing TCRs specific for a M. tuberculosis 38-kDa antigen. J Mol Med (Berl) 2011, 89(9):903-913.
Hu YF, Yang F, Du J, Dong J, Zhang T, Wu ZQ, Xue Y, Jin Q: Complete genome analysis of coxsackievirus A2, A4, A5, and A10 strains isolated from hand, foot, and mouth disease patients in China revealing frequent recombination of human enterovirus A. J Clin Microbiol 2011, 49(7):2426-2434.
Peng J, Yang J, Jin Q: An integrated approach for finding overlooked genes in Shigella. PLoS One 2011, 6(4):e18509.
Cui S, Wang J, Fan T, Qin B, Guo L, Lei X, Wang M, Jin Q: Crystal structure of human enterovirus 71 3C protease. J Mol Biol 2011, 408(3):449-461.
Yang Y, Huang F, Gonzalez R, Wang W, Lu G, Li Y, Vernet G, Jin Q, Wang J: Evaluation of twelve real-time reverse transcriptase PCR primer-probe sets for detection of pandemic influenza A/H1N1 2009 virus. J Clin Microbiol 2011, 49(4):1434-1440.
Li X, Yang Y, Zhou F, Zhang Y, Lu H, Jin Q, Gao L: SLC11A1 (NRAMP1) polymorphisms and tuberculosis susceptibility: updated systematic review and meta-analysis. PLoS One 2011, 6(1):e15831.
Zheng J, Wei C, Zhao L, Liu L, Leng W, Li W, Jin Q: Combining blue native polyacrylamide gel electrophoresis with liquid chromatography tandem mass spectrometry as an effective strategy for analyzing potential membrane protein complexes of Mycobacterium bovis bacillus Calmette-Guerin. BMC Genomics 2011, 12:40.
Yongfeng H, Fan Y, Jie D, Jian Y, Ting Z, Lilian S, Jin Q: Direct pathogen detection from swab samples using a new high-throughput sequencing technology. Clin Microbiol Infect 2011, 17(2):241-244.
Gao L, Zhou F, Li X, Yang Y, Ruan Y, Jin Q: Anal HPV infection in HIV-positive men who have sex with men from China. PLoS One 2010, 5(12):e15256.
Lei X, Liu X, Ma Y, Sun Z, Yang Y, Jin Q, He B, Wang J: The 3C protein of enterovirus 71 inhibits retinoid acid-inducible gene I-mediated interferon regulatory factor 3 activation and type I interferon responses. J Virol 2010, 84(16):8051-8061.
Gao L, Zhou F, Li X, Jin Q: HIV/TB co-infection in mainland China: a meta-analysis. PLoS One 2010, 5(5):e10736.
Zhiqiang W, Yaowu Y, Fan Y, Jian Y, Yongfeng H, Lina Z, Jianwei W, Qi J: Effective siRNAs inhibit the replication of novel influenza A (H1N1) virus. Antiviral Res 2010, 85(3):559-561.
Yang J, Yang F, Huang F, Wang J, Jin Q: Subclinical infection with the novel Influenza A (H1N1) virus. Clin Infect Dis 2009, 49(10):1622-1623.
Wu Y, Yang J, Yang F, Liu T, Leng W, Chu Y, Jin Q: Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes. BMC Genomics 2009, 10:238.
Ren L, Gonzalez R, Wang Z, Xiang Z, Wang Y, Zhou H, Li J, Xiao Y, Yang Q, Zhang J, Chen L, Wang W, Li Y, Li T, Meng X, Zhang Y, Vernet G, Paranhos-Baccala G, Chen J, Jin Q, Wang J: Prevalence of human respiratory viruses in adults with acute respiratory tract infections in Beijing, 2005-2007. Clin Microbiol Infect 2009, 15(12):1146-1153.
Yang F, Ren L, Xiong Z, Li J, Xiao Y, Zhao R, He Y, Bu G, Zhou S, Wang J, Qi J: Enterovirus 71 outbreak in the People's Republic of China in 2008. J Clin Microbiol 2009, 47(7):2351-2352.
Yang L, Zhang X, Peng J, Zhu Y, Dong J, Xu J, Jin Q: Distribution of surface-protein variants of hyperinvasive meningococci in China. J Infect 2009, 58(5):358-367.
Wei C, Peng J, Xiong Z, Yang J, Wang J, Jin Q: Subproteomic tools to increase genome annotation complexity. Proteomics 2008, 8(20):4209-4213.
Wu Z, Gao Y, Sun L, Tien P, Jin Q: Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16. Antiviral Res 2008, 80(3):295-301.
Leng W, Liu T, Li R, Yang J, Wei C, Zhang W, Jin Q: Proteomic profile of dormant Trichophyton rubrum conidia. BMC Genomics 2008, 9:303.
Yan Y, Yang J, Dou Y, Chen M, Ping S, Peng J, Lu W, Zhang W, Yao Z, Li H, Liu W, He S, Geng L, Zhang X, Yang F, Yu H, Zhan Y, Li D, Lin Z, Wang Y, Elmerich C, Lin M, Jin Q: Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501. Proc Natl Acad Sci U S A 2008, 105(21):7564-7569.
Zhang X, Shao Z, Zhu Y, Xu L, Xu X, Mayer LW, Xu J, Jin Q: Genetic characteristics of serogroup A meningococci circulating in China, 1956-2005. Clin Microbiol Infect 2008, 14(6):555-561.
Yang J, Chen L, Sun L, Yu J, Jin Q: VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics. Nucleic Acids Res 2008, 36(Database issue):D539-542.
Yang L, Shao Z, Zhang X, Xu L, Peng J, Xu X, Liang X, Qi Y, Jin Q: Genotypic characterization of Neisseria meningitidis serogroup B strains circulating in China. J Infect 2008, 56(3):211-218.
Zheng J, Wei C, Leng W, Dong J, Li R, Li W, Wang J, Zhang Z, Jin Q: Membrane subproteomic analysis of Mycobacterium bovis bacillus Calmette-Guerin. Proteomics 2007, 7(21):3919-3931.
Yang J, Chen L, Wang L, Zhang W, Liu T, Jin Q: TrED: the Trichophyton rubrum Expression Database. BMC Genomics 2007, 8:250.
Liu T, Zhang Q, Wang L, Yu L, Leng W, Yang J, Chen L, Peng J, Ma L, Dong J, Xu X, Xue Y, Zhu Y, Zhang W, Yang L, Li W, Sun L, Wan Z, Ding G, Yu F, Tu K, Qian Z, Li R, Shen Y, Li Y, Jin Q: The use of global transcriptional analysis to reveal the biological and cellular events involved in distinct development phases of Trichophyton rubrum conidial germination. BMC Genomics 2007, 8:100.
Yu L, Zhang W, Wang L, Yang J, Liu T, Peng J, Leng W, Chen L, Li R, Jin Q: Transcriptional profiles of the response to ketoconazole and amphotericin B in Trichophyton rubrum. Antimicrob Agents Chemother 2007, 51(1):144-153.
Wang L, Ma L, Leng W, Liu T, Yu L, Yang J, Yang L, Zhang W, Zhang Q, Dong J, Xue Y, Zhu Y, Xu X, Wan Z, Ding G, Yu F, Tu K, Li Y, Li R, Shen Y, Jin Q: Analysis of the dermatophyte Trichophyton rubrum expressed sequence tags. BMC Genomics 2006, 7:255.
Peng J, Zhang X, Yang J, Wang J, Yang E, Bin W, Wei C, Sun M, Jin Q: The use of comparative genomic hybridization to characterize genome dynamics and diversity among the serotypes of Shigella. BMC Genomics 2006, 7:218.
Wei C, Yang J, Zhu J, Zhang X, Leng W, Wang J, Xue Y, Sun L, Li W, Jin Q: Comprehensive proteomic analysis of Shigella flexneri 2a membrane proteins. J Proteome Res 2006, 5(8):1860-1865.
Nie H, Yang F, Zhang X, Yang J, Chen L, Wang J, Xiong Z, Peng J, Sun L, Dong J, Xue Y, Xu X, Chen S, Yao Z, Shen Y, Jin Q: Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a. BMC Genomics 2006, 7:173.
Yang J, Chen L, Yu J, Sun L, Jin Q: ShiBASE: an integrated database for comparative genomics of Shigella. Nucleic Acids Res 2006, 34(Database issue):D398-401.
Yang F, Yang J, Zhang X, Chen L, Jiang Y, Yan Y, Tang X, Wang J, Xiong Z, Dong J, Xue Y, Zhu Y, Xu X, Sun L, Chen S, Nie H, Peng J, Xu J, Wang Y, Yuan Z, Wen Y, Yao Z, Shen Y, Qiang B, Hou Y, Yu J, Jin Q: Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery. Nucleic Acids Res 2005, 33(19):6445-6458.
Li L, He Y, Yang H, Zhu J, Xu X, Dong J, Zhu Y, Jin Q: Genetic characteristics of human enterovirus 71 and coxsackievirus A16 circulating from 1999 to 2004 in Shenzhen, People's Republic of China. J Clin Microbiol 2005, 43(8):3835-3839.
Chen L, Yang J, Yu J, Yao Z, Sun L, Shen Y, Jin Q: VFDB: a reference database for bacterial virulence factors. Nucleic Acids Res 2005, 33(Database issue):D325-328.
Jin Q, Yuan Z, Xu J, Wang Y, Shen Y, Lu W, Wang J, Liu H, Yang J, Yang F, Zhang X, Zhang J, Yang G, Wu H, Qu D, Dong J, Sun L, Xue Y, Zhao A, Gao Y, Zhu J, Kan B, Ding K, Chen S, Cheng H, Yao Z, He B, Chen R, Ma D, Qiang B, Wen Y, Hou Y, Yu J: Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157. Nucleic Acids Res 2002, 30(20):4432-4441.